BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB019H07SP1|AL427539
(683 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1086 0.0
>3x_Contig1800
Length = 38778
Score = 1086 bits (531), Expect = 0.0
Identities = 629/680 (92%), Gaps = 3/680 (0%)
Strand = Plus / Minus
Query: 5 tgtcctgttcctgtcgttacaacaactttaccatggactggtac-gtaacaactacattc 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3046 tgtcctgttcctgtcgttacaacaactttaccatggactggtacagtaacaactacattc 2987
Query: 64 actactttraccacaattacaggccaaaatggaggtacttcacctggaaaccttgttgtt 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2986 actactttaaccacaattacaggccaaaatggaggtacttcacctggaaaccttgttgtt 2927
Query: 124 gttgagacccccgaagttcaaactgctaccaccgtcttcwctccatggaccggtgtcagt 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2926 gttgagacccccgaagttcaaactgctaccaccgtcttcactccatggaccggtgtcagt 2867
Query: 184 mccgttactattgccactgaktktgactactaccactggtgccgatggtgttccaactgt 243
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 2866 accgttactattgccactgatt-tgactactaccactggtgccgatggtgttccaactgt 2808
Query: 244 gaagaccatctaccatgtcgaaactccagaagtcgaccaaaagaccactgttttcactcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2807 gaagaccatctaccatgtcgaaactccagaagtcgaccaaaagaccactgttttcactcc 2748
Query: 304 atggactggtaccatttcgtcaacattcgctactgacgttactaccactaccggcaanga 363
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2747 atggactggtaccattacgtcaacattcgctactgacgttactaccactaccggcaaaga 2688
Query: 364 tggtattwanyccgtgaagaccatttaccatkttknmaccccckaakttknccanvagac 423
||||||| | |||||||||||||||||||| || || || || || ||| ||||
Sbjct: 2687 tggtattaaaaccgtgaagaccatttaccatgttgaaactccagaagttgaccaaaagac 2628
Query: 424 cactgttttcaccccanggaccgggaccanntrcgtcaacattcgcgackgncgttacta 483
|||||||||||| ||| ||||||| |||| | ||||||||||||| || | ||||||||
Sbjct: 2627 cactgttttcactccatggaccggtacca-ttacgtcaacattcgctactgacgttacta 2569
Query: 484 ccackacgggggcggncggtatmgaaaccgtkaagamcatttacmatgttkaaamtmcag 543
|||| || || || | |||||| |||||||| |||| ||||||| ||||| ||| | |||
Sbjct: 2568 ccactactggtgctgacggtatcgaaaccgtgaagaccatttaccatgttgaaactccag 2509
Query: 544 aagttgamcaaaagamcacagtctttaccccatggamcggtactattamctcgactattg 603
||||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 2508 aagttgaccaaaagaccacagtctttaccccatggaccggtactattacctcgactattg 2449
Query: 604 ccactgagttgtmcacaamtactggtgcggatkgcgttgaaaccgtcaagaccatttacc 663
|||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2448 ccactgagttgtccacaactactggtgcggatggcgttgaaaccgtcaagaccatttacc 2389
Query: 664 acgtcgagaccccagagttt 683
||||||||||||||||||||
Sbjct: 2388 acgtcgagaccccagagttt 2369
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.717 1.34
Gapped
Lambda K H
1.42 0.717 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2750
Number of Sequences: 1807
Number of extensions: 2750
Number of successful extensions: 134
Number of sequences better than 1.0e-20: 1
length of query: 683
length of database: 10,358,551
effective HSP length: 16
effective length of query: 667
effective length of database: 10,329,639
effective search space: 6889869213
effective search space used: 6889869213
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.6 bits)
S1: 11 (23.0 bits)
S2: 49 (100.7 bits)